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Information

Purpose: Statistics and plotting
Latest version: 3.5.0
License: Open Source - GNU GPL
Website: https://www.r-project.org/ extlink-icon

R is a language and environment for statistical computing and plotting.

R implements tools for data analysis, array operators (especially matrices), I/O features, graphical output features, and a high-level language (S) for integrating all of them, including user-defined variables, loops, etc.

 

 

SLURM Submit script example

For more information use the Job Script Generator.

R_example.slm
#!/bin/bash
#SBATCH -J R_example
#SBATCH -e R_example.err
#SBATCH -o R_example.out
#SBATCH -p std
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --mem=4G

module load apps/R/3.5.0
 
INPUT_DIR=${PWD}
OUTPUT_DIR=${PWD}

cd $SCRATCH
cp -r $INPUT_DIR/* $TMPDIR
Rscript R_example.R > R_example.out
cp ./* $OUTPUT_DIR

 

Sbatch options:

  • -J: Specify a name for the job allocation. The default is the name of the batch script.
  • -e: Specify a name for the error output file.
  • -o: Specify a name for the output file.
  • -p: Specify the name of the partition (queue) where the job will be submited. The default is std.
  • --nodes: Number of nodes requested for allocation
  • --ntasks: Number of processes requested for allocation
  • --mem-per-cpu: Memory allocated per core.

 

 

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