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#!/bin/bash #SBATCH -J R_example #SBATCH -e R_example.err #SBATCH -o R_example.out #SBATCH -p std #SBATCH -n 1 #SBATCH -t 0-02:00 module load apps/R/3.5.0 ## # Modify the input and output files! INPUT_FILE=R_example.R OUTPUT_FILE=R_example.out ## # You don't need to modify nothing more cp -r ${SLURM_SUBMIT_DIR}/${INPUT_FILE} ${SCRATCH} cd ${SCRATCH} srun Rscript ${INPUT_FILE} > ${OUTPUT_FILE} cp ./${OUTPUT_FILE} ${SLURM_SUBMIT_DIR} |
Sbatch options:
The options shown in the example are detailed below. For more information and a more comprehensive list of available options, see the sbatch command page.
- -J: Name for the job's allocation.
- -e: Name of the stderr redirection filename.
- -o: Name of the stdout redirection filename.
- -p: Name of the partition (queue) where the job will be submitted.
-n: Number of tasks.
- -c: Number of cores per task.
- -t: Set the job's time limit. If the job don't finish before the time runs out, it will be killed.